R/utils-plot.R
plot_api_g.Rd
Data frames specified in arguments df_data
,
df_signal
, df_fit
, and df_fit_err
must have a format
where
the first column is the grouping factor (usually id)
the second column is the x-axis variable (usually age)
a column named y
must contain the y-axis variable
(not for df_fit_err
)
a column named lower
(upper
) must contain the lower
(upper) bound of error bar (only for df_fit_err
)
a column named draw
must be a factor that
specifies the posterior draw using which the fit has been computed
(only for df_fit
)
plot_api_g( df_data, df_signal = NULL, df = NULL, df_err = NULL, teff_signal = NULL, teff_obs = NULL, i_test = NULL, color_signal = color_palette(2)[1], color = color_palette(2)[2], color_err = colorset("red", "light_highlight"), color_vlines = colorset("gray", "mid_highlight"), alpha = 1, alpha_err = 0.5, nrow = NULL, ncol = NULL, y_transform = function(x) x )
df_data | A data frame containing the observations. |
---|---|
df_signal | A data frame containing the true signal. Omitted if
|
df | A data frame containing the model fit, or a list of data
frames. The list version can be used for example so that each list element
corresponds to the fit computed using one parameter draw. Omitted if
|
df_err | A data frame containing error bars. Omitted if |
teff_signal | A named vector containing true effect times used to
generate the signal. Omitted if |
teff_obs | A named vector containing observed effect times. Omitted if
|
i_test | Indices of test points. |
color_signal | Line color for true signal. |
color | Line color for model fit. |
color_err | Color of the error ribbon. |
color_vlines | Two line colors for vertical lines (true and obs. effect time). |
alpha | Line opacity for model fit. |
alpha_err | Opacity of the error ribbon. |
nrow | number of rows, an argument for
|
ncol | number of columns, an argument for
|
y_transform | A function to be applied to the third column of
|
A ggplot
object.
Other internal plot API functions:
plot_api_c()